Jamie Bojko

6 Questions 14 Answers 0 Followers

Questions related from Jamie Bojko

Assemble NGS data based on a single input sequence to build from?

Hey RG community, I'm wondering if anyone knows of a good genome assembler software (and the code needed) to assemble NGS data (Illumina/ON/PacBio) based on a single sequence, building from this...

14 February 2025 2,760 1 View

Hi everyone, any points for low density clusters for a V3 600 MiSeq cartridge using Nextera XT?

Hi everyone, Today I put on a MiSeq run using Nextera XT library preparation to be run on a V3 600 cartridge. After ~20 cycles it has given me a low cluster density of 473K/mm2. The quality...

08 April 2016 8,142 2 View

Aquatic Biocontrol - A subject lacking in study?

Aquatic biocontrol seems to be an area that has had little input with few, if any, examples. Is anyone able to provide information on past or future studies within this topic?

01 May 2013 6,604 12 View

The Volga River in Russia: geography, invasive profile and pathogen presence. Is anybody able to provide information?

Future work has directed an interest to The Volga Rover in Russia. Is anyone able to provide me with information on the region and in particular the best time to sample macroinvertebrates? As...

23 April 2013 2,657 5 View

Dikerogammarus villosus, known locations throughout its native and invasive range: can anyone help?

I hope to create a map which compiles all the known areas of D. villosus populations throughout its invasive and native ranges. I understand that several maps already exist but may be slightly out...

10 April 2013 9,051 12 View

Can anyone recommend a reliable Genome annotation software?

Pending work on annotating a viral genome (~1Mb) and a microsporidian genome (~7.5Mb) I hope to find a reliable genome annotation software which is capable of detecting a variety of genetic...

27 March 2013 6,632 10 View