Héctor Valverde

4 Questions 13 Answers 0 Followers

Questions related from Héctor Valverde

What is the proper way to refer a new program in a paper?

Currently, we are revisiting a manuscript following some suggestions made by anonymous referees. Between such suggestions, they considered necessary publishing the software that we developed,...

06 June 2013 3,627 10 View

Does anyone know how to get a good orthologous multiple alignment beginning from a single sequence and a BLAST database?

I am a newbe in Molecular Evolution, but I think many people have faced the problem of harvesting a good collection of orthologous sequences for the same gene (different species - same gene). I...

11 November 2012 9,462 4 View

How can I draw proteins like in PDB 'Molecules of the Month'?

I love the comic style of some protein images in Protein Data Bank. It looks like a comic drawing (see attached image). I noticed that YASARA Model (but not YASARA View) is able to do this, but...

07 July 2012 3,730 13 View

What is a good command line program for phylogenetic distance calculation?

I use MEGA 5 (http://www.megasoftware.net/) for MacOS to calculate phylogenetic distancies basen on non-synonimous substitutions. However, in order to implement such calculations into my pipeline,...

06 June 2012 8,355 7 View