Franco Magurno

5 Questions 13 Answers 0 Followers

Questions related from Franco Magurno

Gap partition in RAXML analysis at Cipres Gateway, how to deal with a mix of short and long sequences?

I started to add recently the gap partition in my ML analysis of ribosomal genes because it improves the results. To perform my analysis I use the online version of RAXML at Cipres Gateway. I add...

28 March 2020 5,897 5 View

There is any simple criterion to select the p.adjustment method in Dunn's test (using R)?

I am analyzing with R some data about root colonization by AM fungi of a plant (5-6 replications) in different environments. I checked the normality of data inside every group (environment) with...

19 February 2016 5,337 5 View

Is there a webtool to predict the outcome of amplification (suggesting the Tm) using primers with mismatches (not in the 3' end) in target sequence?

Do you know any webtool to predict the outcome of an amplification (and suggesting the Tm) using primers containing several mismatches (not in the 3' end) with the target sequence?

12 October 2015 6,849 1 View

Is it possible to make a hierarchical clustering analyses for a PCoA?

I made a Principal Coordinate Analysis using the package ape in R, giving as input a pairwise phylogenetic distance matrix of my the samples. I was wondering if it possible to get a hierarchical...

30 April 2015 7,657 3 View

How do you split the environmental factors from the influence of agricultural treatment on microbial communities?

I want to evaluate the effect of different treatments on the composition of microbial community. The treatments consist in different crop rotations and I have two repetitions (communities) per...

25 April 2015 5,487 3 View