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Questions related from Caroline Jilbert
I am new to extracting RNA from fruit flesh. Currently, I'm extracting RNA from sweet cherry flesh using Fruitmate and Nucleospin Takara Bio. I have tried using RNeasy kit Qiagen but I failed (but...
17 March 2023 4,808 2 View
I have a generated a model based on a template. this template also contains a natural ligand, 4 calcium atoms, and a zinc. I would like to add the zinc and calcium atom but not the natural ligand....
26 September 2021 5,548 1 View
I used SaliLab Model Evaluation Server to evaluate the model generated in homology modelling. I got a predicted RMSD score of 3.830 Å, but I don't understand how to interpret the number, whether...
26 September 2021 8,074 4 View
I tried to do homology modelling using MODELLER and I calculate the RMSD value of the template structure and the model result using PyMol. The result shows...
25 September 2021 3,394 3 View
I've tried to do homology modeling using Pymod 3 and got the model. But the thing is there's nothing on the DOPE Profile graph. I've tried to click the 'Fit to Data' option but nothing appeared....
18 August 2021 9,610 2 View
I tried using Pymod 3 for homology modeling, but this occur after I submitted the work. What does it mean and what should I do? I have downloaded the Modeller and activated it. Thank you so much...
18 August 2021 6,941 3 View
When I run the compare.py script, there's an error: OError: pdbnam_____E> Filename for PDB code not found: 5a3y Directories: ../atom_files Extensions :...
14 August 2021 9,767 1 View
I prepared my macromolecule (adding hydrogen and Gasteiger charge), ligand (choosing torsion), and grids using Autodock Tools and proceed to molecular docking using Autodock Vina. But when I read...
27 July 2021 1,879 5 View
