Arijit Ghosh

8 Questions 31 Answers 0 Followers

Questions related from Arijit Ghosh

Is there any tool or package to prepare input files for Circos from NGS data?

Any tool or package to prepare input files for Circos visualization of NGS data? I know of some, but not very user-friendly.

09 September 2018 9,623 4 View

Variant discovery for variation in quantitative traits between two lab selected populations (4 replicates) from pooled genome sequencing?

Is it possible to discover the variants responsible for variation in quantitative traits between two laboratory selected populations by pooled whole genome sequencing? If yes, how? Also, keep in...

09 September 2018 9,087 12 View

What is the best way to find out which gene a nucleotide belongs to if I have the chromosomal location of that nucleotide?

I have list of some nucleotide positions after an analysis, I need to find out which genes those nucleotides belong to. This could be done in UCSC, DAVID etc, but remember, I do not have a range...

02 February 2018 6,415 11 View

How to download a set of genes from any study/report for analysis in DAVID and PANTHER (For practice purposes) ?

I need to download any gene set to analyze them in DAVID and PANTHER as part of a course. Most of the database are not giving tab delimited text files to put into DAVID or PANTHER.

05 May 2017 9,914 3 View

Any suggestions before buying YASARA Structure package to be used mainly with Transmembrane Ion channels (modeling and MD mainly)?

I am thinking of buying YASARA Structure package to use it for Transmembrane ion channel homology modeling, MD simulations etc. I was wondering if someone can help me with understanding this whole...

03 March 2015 5,894 11 View

How can I measure intracellular Cadmium, Strontium and Arsenic concentration?

I want to measure the uptake of Cadmium, Strontium and Arsenic by cells. I want to do it in live cells mainly, so it will be better if someone can suggest any methods involving microscopy. Any...

12 December 2014 8,574 9 View

What are the working concentrations of Lat A and Lat B in Drosophila embryos for disrupting Actin completely?

Please provide reference.

06 June 2013 8,753 0 View

What can I use to permeabilize the vitelline membrane of a drosophila embryo, besides D-Limonene?

What can we use except D-limonene? It's basically an organic solvent, but the permeability is actually about the waxy layer (~5 nm) surrounding the vitelline membrane. Would acetone be right for this?

05 May 2013 4,680 13 View