15 Questions 26 Answers 0 Followers
Questions related from Ankit Agrawal
Hi, I am trying to develope a MD simulation model for the growth of cells in LAMMPS. I am conisdering each cell as an analog to finite size particle. The cells are intitially as small and as they...
28 May 2020 9,971 1 View
HI, I have a 3D object whose shape is irregular. Shape of object can be both convex or non convex type. The shape of object is defined by triangulated mesh. So, I have the vertex and edge...
08 April 2019 9,121 4 View
Hi, Which software would you recommend to do 3-d bio and medical image analysis/processing. I heard some good library in ImageJ, MATLAB, CellProfiler and ICY. Which one should I start learning...
30 October 2018 9,094 3 View
Hi, Nowadays, there are so many RNA detected so it is difficult to keep track of all the RNAs. Recently, I read about enhancer RNA that it is part of noncoding trancripts. I also read about...
31 January 2018 3,899 4 View
Hi, I am confused with NADs (Nucleolus associated chromatin domains) and NORs (Nucleolus organizer regions). NOR contain multiple copies of ribosomal RNA genes (rDNA) around which nucleoli form....
05 October 2017 2,619 3 View
Does anyone know the publicly available imaging data of microscopy techniques for developing embryo, cell shape etc.
03 November 2016 5,836 3 View
Hello Everyone, I have bunch of RNASeq data of differential expressed gene. I wanted to find the transcription factor binding site of these gene. How can i find? Do i need to see the pathway...
28 July 2016 5,037 7 View
Hello everyone, In all theses methods like 3C, 4C, 5C, (Hi-C) what are the relative difference of contact frequency between intra chromosomal interaction and inter chromosomal interaction. Can we...
12 April 2016 378 5 View
Dear Biologist, Recently i was reading supplementary article of Kalhor nature biotechnology 2012 paper. And there in one line where they said centromere in p-arm and q-arm of chromosome. Till now...
23 March 2016 4,795 5 View
Is anyone know how to paralleled the multi for loop in MATLAB. Here what i wanted to do [xg,yg,zg] = meshgrid(something); for i=1:length(xg,1) for j=1:length(xg,2) for k=1:length(xg,3) for...
30 April 2015 4,115 2 View
I am using different clustering methods which gives different clustering output. I need to benchmark to find out which clustering method is the best. I have 20-25 clusters and 25000 samples. I...
01 January 1970 8,848 6 View
Hi, I have a computational biology backgroud and right now studying how the cells are organized in a tissue. Someone told me that my cells are orientated in specific manner so it has some kind of...
01 January 1970 5,423 3 View
I want to understand the difference between PCA (principal component analysis) and NMF (non-negative matrix factorization) in terms of explaining variability. When we apply PCA into...
01 January 1970 7,615 6 View
Hi, I have confusion about the the number of nucleolus present in human cell nuclei. What is the relationship between cell cycle stage and size & number of nucleoli present in nucleus. The...
01 January 1970 307 10 View
Hello everyone, I wanted to know what are theory available for collective cell migration especially in the context of connective tissue. Connective tissue are those where ECM is occupied between...
01 January 1970 3,044 0 View
