18 Questions 15 Answers 0 Followers
Questions related from Ahmad Ali
what are the suitable software to analyze of raw DNA sequences for microbial diversity analysis ?
01 November 2018 4,144 3 View
how to avoid primer dimer formation ?? im getting primer dimer even after increasing the temperature, increasing DMSO , what should be done ??
19 February 2018 4,921 6 View
Can anyone help me in understanding and clearly interpreting ANOSIM (Analysis of Similarity) results given in a graph?
01 January 1970 7,146 1 View
I have a 16s rRNA amplicon sequences (next generation sequence), I want to find out the phylogenetic diversity of a geographical region, How can I do that? please tell me the different...
01 January 1970 6,421 4 View
What are the suitable software to analyze the raw DNA sequences (16S rRNA data ) for microbial diversity analysis ?
01 January 1970 7,222 6 View
what are the important data and parameters needed to predict a model to check the impact of climate change on a region? please suggest me your ideas to overcome this problem .
01 January 1970 9,125 4 View
I have 16s metagenomic raw data to be analysed , please describe me different software and its work application to analyse it with respect to diversity ?
01 January 1970 1,142 2 View
I was working on plasmid isolation from an organism but i didn't got plasmid via plasmid isolation kit. However, later on i extracted the gDNA from that portion of the given organism, luckily i...
01 January 1970 9,639 4 View
I would like to determine the functional role of a non cultured or eDNA based given bacterial community. Is there any online tool available which could determine the possible functional role of a...
01 January 1970 9,811 3 View
I am very naive with the Illumina sequencing and I got the sequenced raw data and report. I am quite new with the technique and terminology. Can anyone explain what it means that was sequenced...
01 January 1970 6,070 13 View
I am new in NGS, so I have a question, why is bad to have similar sequences in the fastq file? Would not be normal to have more than one copy of the same read?
01 January 1970 9,138 2 View
which one is a suitable tool to check the quality of NGS high throughput sequence; FastQC or MultiQC or any other tool ?
01 January 1970 3,204 9 View
I have Raw data sequenced on Mi-seq NGS platform, the prime objective is to analyze the diversity of the given sequences. what could be the various pipelines and methods to distinguish the...
01 January 1970 1,882 9 View
What is article processing charge and why the publication fee is charged to Author? is not it a burden on the authors?
01 January 1970 7,395 3 View
I have a question regarding interpretation of alpha diversity boxplots (Shannon, Bray-Curtis, etc.). How are the whisker and box lengths determined? Does the box represent the upper and lower...
01 January 1970 8,579 3 View
Is bootstrap necessary for the construction of phylogenetic tree and what is the best no. of bootstrap replicates value for construction of bacterial phylogenetic tree by any method? I have seen...
01 January 1970 357 3 View
I have to perform a comparative analysis of my metagenomic 16s rRNA data (samples) with different other regions, please suggest me different methods and database in detail .
01 January 1970 5,461 3 View
What is the total size of 18s rRNA? And what are the sequence length of each region from i.e V1, V2, V3, V4 etc? I am working on identification of invertebrates from different environmental...
01 January 1970 2,588 1 View