hi everyone
i have a problem with my protein samples after enzymatic hydrolysis.i am hydrolyzing collagen protein with Glu-C V8 protease in Na3Po4 pH=7.4 temp= 37c for 25 min. for the first time after hydrolyzing i got some bands on SDS-PAGE gel, about 50-110 kD in addition to my main protein band with about 140 kD but after that when i repeat hydrolyzing with new sample of main protein with all the same conditions i cant get the bands in range 80-110, except 50 kD and main protein band in 140 kD. i tried time of incubation and sample concentration and even i did silver staining in addition to coomasie blue staining but the result were the same with just 2 bands mentioned.please help me.i want to know can i trust to this result of hydrolyzing to get peptides ?