I was trying to install gromacs4.5.5. I have followed the tutorial http://www.gromacs.org/Documentation/Installation_Instructions_4.5.5 using fftw3.1 and automake, openmpi. When I was using --enable-shared with ./configure, I was getting an error while compilation (make and make mdrun):
libtool: link: cannot find the library `../mdlib/libmd.la' or unhandled argument `../mdlib/libmd.la'
make[1]: *** [libgmxpreprocess.la] Error 1.
As written libmd.la (inside mdlib) is not available but gromacs-4.5.5/src/mdlib/libmd.la is present.
So what may be the cause