Which database can be considered for creating cytoscape network?

More Sonam Malik's questions See All

How to compare two groups with only two measurements?

Hiiiii everyone! I have an enquiry on statistical analysis. I was looking for many forum and it's still cannot solve my problem. I want to compare means of two groups of data but only with two...

03 March 2021 8,796 3 View

Hello fellow researcher .. What is the meaning of your name?

I would like to create a small guide containing the meanings of the names .. Thanks to everyone who cooperates with me in achieving it.

03 March 2021 5,266 4 View

Is There Any Feasible Method To Test Fluorescent Compounds Other Than Fluorescence Spectrometers ??

Is There Any Feasible Method To Test The Efficiency Of Fluorescent Compounds Other Than UV Spectrometers ? Suggestions Would Be Appreciated !

02 March 2021 5,785 3 View

Is it possible to do piezoelectric coupling in ANSYS-APDL or COMSOL between tapered substrate and rectangular piezoelectric patch?

How to do Piezoelectric coupling in ANSYS-APDL or COMSOL between tapered substrate and rectangular piezoelectric patch? Piezoelectric coupling between the rectangular substrate and rectangular...

02 March 2021 9,833 3 View

Does anyone know HRM channel in a 2 plex QIAGEN Rotor- Gene Q qPCR can be used as a separate channel?

I am going to have 3 different probes in my qPCR work that I am going to do. But I realized that the machine we have in the lab is a Rotor-Gene Q 2plex HRM Platform, saying it has green, yellow,...

01 March 2021 8,544 1 View

Adherance of Polyaniline coating over stainless steel?

Is the electropolymerisation of polyaniline coating over stainless steel (SS) via Cyclic voltammetry technique is really adherant? Else how to improve the adhesion of the coating, whether any...

01 March 2021 8,220 2 View

How can you bring two structures together to create an adhesive bond in LAMMPS?

I have created an Ice 1h crystalline structure and an Aluminium substrate structure and equilibrated both at 250K. Now I need to bring them together in a way that an adhesive bond is created....

01 March 2021 3,325 2 View

No title

Does anyone have the experience of using Taq Man probes in the QIAGEN Rotar- Gene qPCR machine?

01 March 2021 5,311 1 View

Why is the sum of the elements in a row in a Q matrix equal to zero?

When explaining substitution models, the substitutions are expressed as Q matrix. Why is the sum of the elements in a row zero?

28 February 2021 3,864 3 View

How to model the battery pack in PSIM or PSCAD?

Hello, I have simulated a single battery cell using Thevenin equivalent circuit. For a battery pack, I have a large number of cells connected in series and parallel connections. Is there any way...

28 February 2021 2,116 1 View

Antibody amino acid sequence database to simulation?

Hello, I need your help. I am looking for a database of antibody amino acid sequences for later simulation in a program in order to analyze their structure. The antibodies I need to test...

18 February 2021 371 4 View

How to create network in cytoscape for deferentially expressed proteins?

I have 74 proteins which have been changed after cell treatment. I would like illustrate a network, based on this genes. I wanted to use cytoscape (v 3.7.1). but I do not know how and in which...

21 September 2020 2,528 3 View

Can anyone help me with Cytoscape app RWRMTN?

Hi I am trying to use the app RWRMTN in cytoscape, but seems that my computer can't load the data set. The process is using more than 90% of the RAM (16GB; amd ryzen 5 3.2ghz 6 core...

16 August 2020 3,672 2 View

How to draw Transcription Factor network map?

Dear everybody, I use gProfiler to identify the TF enrichment analysis and then extract the file *.gem to import to the Cytoscape for drawing the TF network map. But the result is quite messy...

18 May 2020 7,512 4 View

Cytoscape 3.2.0 ? bioinformatics?

Need help regarding cytoscape aap section Need to access aap, means need to add more and more AAP's to analysis And it is continuously showings not connected to internet. Even after changing the...

11 May 2020 1,824 2 View

Cytoscape aap related issue? Bioinformatics ?

Need help regarding cytoscape aap section Need to access aap, means need to add more and more AAP's to analysis And it is continuously showings not connected to internet. Even after changing the...

11 May 2020 3,672 3 View

Can cytoscape be used to find target for the ligands?

Consider, I have a set of drugs and proteins. I am curious to know if there are any Cytoscape plugin that can map a network between these set of protein and drugs.

28 April 2020 9,034 2 View

Gene ontology without global gene expression analysis?

Hi everyone! I've been study the expression of 5 microRNAs using TaqMan assays in several cell lines (microRNAs were selected through literature review) and I obtained statistically significant...

12 February 2020 2,745 4 View

Gene ontology without global gene expression analysis?

Hi everyone! I've been study the expression of 5 microRNAs using TaqMan assays in several cell lines (microRNAs were selected through literature review) and I obtained statistically significant...

01 February 2020 7,483 3 View

Is there anyone who knows the manner of building a miRNA network with cytoscape or any other free software?

I am looking for a database or a software that helps me to draw miRNA network (miRNA and their Targets). Thank you.

31 December 2019 2,604 4 View