In most cases, that is the atmosphere (via an oil mist-trap: if on a rotary 'roughing' pump). Simply follow the line from the last pump's exhaust.
Ah: a sputtering chamber - well, that's a relatively poor vacuum (depending on the size of that chamber - but in any case the argon probably vents to the laboratory via a filter or two. It would be hard, but not impossible, to sequester it.
In a sputtering chamber you usually want to be able to control the exposure that the item-to-be-coated has, to the beam of hot vapour.
Without knowing the details of your system, I imagine that there's a mechanical shutter - which can be electrically actuated to block off the object being coated from the beam of hot vapour.