I need to know about the bioinformatic database and resources for abiotic and biotic stresses?
For Example:
PRGdb: a bioinformatics platform for plant resistance gene analysis
Hi Yousef,
Here is a link to a small set of databases related to stress.
http://www.bioclues.org/pspdb/Link.php
If you specify the organism and your aim, others may able to suggest more resources.
Dear Roger P Wise,
Thanks for your attention, could you explain more about the database?
PSPDB: Plant stress protein database
In addation you can use microarray and RNA-seq data in NCBI
also see the attachment
Dear Yousef Alaei,
You can look these links
http://www.ncbi.nlm.nih.gov
or
http://www.ncbi.nim.nih.gov/gquery/gquery.fcgi
if you're talking about Arabidopsis related information you can check the eFP browser for gene expression differences in respons to several biotic and abiotic stresses. This is based on publicly available and published data. Genevestigator is a web available program that allows you to go through all available microarray data gathered for Arabidopsis. The data was collected and normalized in the same way. You can look for genes that consistently respond to a certain stress parameter, or for the stresses that a specified gene responds to.
their is several public data base you can check it such as blast and NCBI
https://books.google.co.in/books?id=fJa4BAAAQBAJ&pg=PA365&lpg=PA365&dq=biotic+stress+bioinformatics&source=bl&ots=1u2DgId2Bu&sig=2wwgVI8D5ngaHT8nTsqRF8pjAjE&hl=en&sa=X&ved=0CEQQ6AEwBWoVChMIguLQq9CgyAIVgkyOCh1SjAQs#v=onepage&q=biotic%20stress%20bioinformatics&f=false
Dear Yousef Alaei
Here, numbers of links related to your target databases have been attached. Before surfing through the literature to find some relevant websites in accord with your project goal, try to specify your terms of search especially in the case of that stress you would like to work on. For each aspect of plant tensions, at least five to ten databases presently developed within the academic web-pages. I hope the following links support you for retrieving quintessential information you would like to archive. Please let me know if you want get far more specific data in this case. I am at your disposal.
1- http://www.plantstress.com/
2- Article PSPDB: Plant Stress Protein Database
3- http://www.pathoplant.de/
4- http://www.isaaa.org/gmapprovaldatabase/commercialtrait/default.asp
5- http://ccbb.jnu.ac.in/stressgenes/
6- http://bioclues.org/pspdb/Link.php
7- https://www.biorxiv.org/content/10.1101/456343v1
8- https://www.cottongen.org/node/1287313
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