I created a pdb rhamnolipid molecular structure using gaussview and I tried using charmgui to create generate files for my molecular dynamic simulations. But unfortunately, charm gui wont create the files (including generating force fields). Question what tools can i used to generate my structures that will be accepted by charmm gui ?
Vinnarasi Saravanan
Hi,
You can use 'Avogadro' to generate a PDB or MOL2 file format that is compatible with CHARMM-GUI.
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