I am trying to find associations between dorsal patterns (uniform, complex etc) of frogs and microhabitat selection (leaf litter, rock etc). I am using a 5x6 contigency table but more than 20% have < 5 expected values, because of this I have opted for the Fishers exact test rather than chi square. The following code was used that gave a significant result:
fisher.test(CT.MH.PAT, simulate.p.value = TRUE, B=100000)
I now need to find out which levels associate most with each other but I am struggling to find which post hoc test I should use. I have attempted to use the following:
fisher.multcomp()
pairwise.fisher()
chisq.posthoc.test()
pairwise.t.test()
But R doesnt seem to recognise these functions (I have devtools, tidyverse and MASS all loaded), is there a package I am missing?
If anyone could provide some assistance, or perhaps a good source I can read through! Thank you.
You can try with the packages("rcompanion").
Please see the details in the link: https://rcompanion.org/rcompanion/b_07.html
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