I have used DAPI-staining to determine nuclei number in fungal cells. A small portion of the hyphal mat growing on the surface of the medium were fixed in 2% formaldehyde for 2 min on slide and rinsed with distilled water for 1 min, followed by staining with Gold antifade reagent with diamidino-2-phenylindole (ProLong® DAPI, Invitrogen, USA) for 10 min, and destained with distilled water for 2 min. A drop of 50% glycerin was placed on stained specimen and covered with glass cover slip. Hope it will work for you.