What is the indexError in afterqc for RNA sequencing?

11 March 2019 0 9K Report

I am trying to use afterqc for quality control of fastq files. I see this error:

IndexError: string index out of range

this is my command:

pypy after.py --read1_file=/home/mahsa/Documents/HCT116/SRR1756569_1_fastqc.zip --read2_file=/home/mahsa/Documents/HCT116/SRR1756569_2_fastqc.zip --trim_front=-1 --trim_tail=-1 --trim_pair_same=false -z --qualified_quality_phred=20

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