29 November 2022 0 6K Report

hello all,

I'm new to MD simulation and want to analyze the pocket volume during the trajectory. Is there any tool which can perfectly predict the same.

I used POVME program to find the volume, however the pocket predicted by this program is giving predictions of pockets on the surface of the protein not inside, hence i want to know any other alternatives besides this program and if someone know exactly how to run this program, pls put your comments into it.

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