What is the best software to do pathway analysis from a list of uniprot protein ids?

11 October 2022 1 7K Report

I am new to the proteomics field and would like to analyze which pathways explain the list of protein ids I got from a Mass Spec analysis.

Frederic Lepretre

Hi Melissa Vorster

as IPA (https://digitalinsights.qiagen.com/explore/ipa-ga?utm_source=QDI_GA_SA_IPA_0922_PF&cmpid=QDI_GA_IPA&gclid=Cj0KCQjwy5maBhDdARIsAMxrkw3pS1E-5mVdGLL0V7gn4eqnuoM5BiJHKFIdt3d-WtupOOc0mckY3TAaAgn9EALw_wcB) which is licenced and expensive, there are a lot of free tools to undergo pathway analysis, try DAVID (https://david.ncifcrf.gov), or stringDB (https://string-db.org), GSEA (https://www.gsea-msigdb.org/gsea/index.jsp)...

all the best

fred

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