Hi, i have to perform MD simulation of a no of Drug-DNA complexes (for now, its just 14; but i have over 50+ docked complexes).
Can anyone suggest fast and reliable methods for the same?
Is it method or software?
as far as software is concerned its gonna be gromacs... but the real deal is the method.. kindly help !!
Your question is very confusing. I do not know why the young researchers do not like checking the relevant literatures before starting their projects.
Using StandardDynamicsCascade protocol for MD Simulation in biovia discovery studio software. Its easy to run and analysis the results.
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