Regarding generation of DNA topology using Gromacs?

11 November 2017 0 4K Report

Dear researcher,

I want to simulate a protein-DNA complex. I can simulate the whole DNA but i want to simulate the nicked DNA. When i try to generate the topology of that ligand complex using GROMOS force field, it is giving the error.

Residue 'DC' not found in residue topology database

How can i solve this problem. please suggest me.

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