I updated the toplogy file. After that I used this command
grompp_mpi -f minim.mdp -c system_inflated.gro -p topol.top -o em.tpr
ERROR 5877 [file topol.top, line 13629]:
No default LJ-14 types
There were 5997 errors in input file(s)
Justin Lemkul
The force field does not have parameters for the molecules in the system. Either the topology has errors or the force field is not constructed correctly. Given the line number(s) printed, you can identify which atom types are involved in the missing interactions.
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