I wanted to use the GEO Profile data (www.ncbi.nlm.nih.gov/geoprofiles/) to quickly check different RNAseq datasets. I'm only interested in a single gene (Arhgap25). However, there are usually 2-3 different sets of results for the same gene. I attached an example. Although 2 of them are transcript variant 1 (NM_00100723) and 2 (NM_014882), there are 2 quite different sets of values for the latter. Could someone provide some insight on why there are different values for the same variant? I’m also curious to know the best approach to evaluate these results. Is it better to focus on one specific variant or use their average? Thanks in advance!