After using autodock vina,
I analyzed the result that ligand have a binding energy of -9.5 kcal/mol.
BUT I can't find any hydrogen bonds through the interaction.
What's the problems?
Can i consider this result of docking ?
Waseem Ahmad Ansari
Hi Raindy Cooper
You can consider the results and it quite possible your complex showing hydrophobic interaction. If any confusion so you can triplicate perform. Next step you can perform MD simulation and conclude there.
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