Kindly suggest any free software for scaffold hopping??

More Anupriya Adhikari's questions See All

I am carrying out an experiment on Trichoderma. How can I measure OD of the fungal growth after 7 days?

I am carrying out an experiment on Trichoderma and need to measure OD of the fungal growth after 7 days. Unlike bacteria, fungus clump together making It difficult to get OD for the fungal growth....

11 July 2024 6,251 1 View

What does Habitat Occupancy mean? How to calculate Habitat Occupancy for a small animal species?

I want to assess the habitat occupancy of a small species in a habitat. What should I collect as field data to assess its habitat occupancy?

06 February 2024 9,039 4 View

Why has development cooperation been less productive in less developed countries?

Is it because of the weak governance of the recipient countries or the hidden interests of the development partners that influence the policies?

28 December 2023 378 3 View

How can I access it to publish my article?

I want to publish my academic article in this journal. How is it possible?

26 December 2023 421 4 View

What is the specific impact of microsatellite marker analysis on unraveling the genetic diversity and population structure of sheep in Nepal?

What is the specific impact of microsatellite marker analysis on unraveling the genetic diversity and population structure of sheep in Nepal, and how does this information contribute to the...

26 November 2023 3,797 0 View

Why Big Data are to be secured? Is it any threat to National Security?

Data Security Big Data

14 August 2023 2,922 6 View

How to implement map reduce algorithm on hypercube network in matlab/ python?

Map reduce framework need to be implemented on hypercube network architecture in MATLAB or Python progeamming

14 July 2023 8,137 5 View

Topology file of PubChem CID 134149698 from swissparam?

Dear researchers, I tried to obtain a topology file of a compound with PubChem CID of 134149698 from swissparam. Following is the error message. Please let me know the way to solve it. Thanking...

12 July 2023 8,282 0 View

Hi Researchers,Can we relate the earthquake and mushroom diversity or mycorrhizal diversity? If yes, How?

Can we relate the earthquake and mushroom diversity or mycorrhizal diversity? If yes, How? Thank you.

05 June 2023 2,078 2 View

Optimization using b3lyp in GAMESS?

Can anyone help me to set the input file for optimization runs in GAMESS? Any suggestions you can give. This is what I set.

07 May 2023 8,110 1 View

Which Scopus Journal provides the most affordable fees?

"PUBLISHING IN A SCOPUS JOURNAL" Researchers are now at a cross road. The critical need to publish in a Scopus or ISI, etc journal is ever vital. Journal Publication fees must be submitted....

10 August 2024 8,621 1 View

GC-MS retention index prediticon?

Hello experts, Does anyone know any free software about retention index prediction ?

08 August 2024 7,403 2 View

Could you please suggest methods to compare free protein and immobolized protein binding properties?

I have an antibody binding generic protein and I need to compare its activity in a free and immobolized form. I understand that there are a number of methods to determine Kd value of a free...

05 August 2024 5,311 0 View

Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

02 August 2024 8,704 7 View

Where can I find free research instruments for Nursing?

for eg. transition shock scale

01 August 2024 5,998 0 View

Why do open and free science in a world where science is not open and free?

Because I have realized that the world tends more and more to do open and free science and there is a trend more and more to choose free databases, free tools and open access platforms.

01 August 2024 10,046 1 View

I am working on my Master's thesis on the biogeography of the genus Ruagea and I would like to ask, could someone help me to check whether my result?

I created a file with my outgroup and ingroup species using Beauti, ran it in BEAST, viewed it in Tracer, and then used TreeAnnotator to create a file that I imported into RASP. Could someone...

28 July 2024 2,979 1 View

My cfDNA extraction protocol using silica beads works with plasma collected in COD SAGM bags but not with plasma collected in K2 EDTA tubes. Why so?

I am currently performing cell-free DNA (cfDNA) extraction from plasma using an in-house developed kit that employs silica-coated magnetic beads. My protocol works effectively with plasma obtained...

28 July 2024 3,559 0 View

Do you know of any online international conferences that offer free discussions?

Do you know of any online international conferences that offer free discussions? I am looking for examples in the field of molecular ecology and DIY biology.

28 July 2024 6,501 0 View

Which software tools are best for enhancing diagnostic accuracy in chest X-ray imaging using image reconstruction and neural networks?

I am reaching out to seek your valuable advice and recommendations regarding the best software tools to use for this research. Specifically, I am looking for software with a user-friendly...

22 July 2024 3,794 1 View

Abdelhak Maghchiche

For scaffold hopping, consider using GraphGMVAE, a deep learning tool for generating scaffolds efficiently. Alternatively, RDKit is an open-source cheminformatics library that supports scaffold analysis and molecular transformations.

Andrea Mauri

You can check alvaBuilder Article AlvaBuilder: A Software for De Novo Molecular Design

can be easily used for scaffold decoration. See: https://www.youtube.com/watch?v=Duu10E4oQ1A