I have used Autodock 4.2 for docking studies and trying haddock for DNA-Ligand docking. It shows an error and not supported DNA PDB file. Suggest a template for DNA and ligand PDB file and also suggest me another webserver for this.
AutoDock: Article Docking Studies on DNA-Ligand Interactions: Building and App...
rDock: http://rdock.sourceforge.net/
(i have not tried them, but the source codes are available; so if the programs do not work as desired, they can be modified.)
Have you tried patchdock? bioinfo3d.cs.tau.ac.il/PatchDock/
Hi,
Use Patchdock or Mcule's 1clickdocking. It might be helpful for you.
@Martin Klvana is rdock suitable for windows?
Pallavi Agrawal, could be, if compiled with Cygwin?
Try Mcule
https://mcule.com
@ Arli Aditya Parikesit I have tried docking through patch dock but it gives error can you suggest a modified PDB template for DNA and ligand
Try Swiss dock.
http://www.swissdock.ch/
You may also try autodock through scripts:
Code Automatic Autodock Script
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