2)__ Rosetta and the user group, "Rosetta Commons"
A suite of molecular modeling and search tools called Rosetta. Can calculate the energy of a folded protein and search for the lowest energy sequence for a given structure, or the lowest energy structure for a given sequence. Developed by Baker Labs in the late 1990s as a tool for predicting structure. The software has been under continuous development ever since, both by members of his lab and a community of several hundred users called the Rosetta Commons, to improve its performance and capabilities
3)__ the MNNN model for prediction of protein structures.