We are in the process of manufacturing of Indigo and Leuco indigo. The methods available in the literature is by spectroscopic method and titrimetric method.
Your can separate and measured Indigo and Leuco indigo dyes based on any reversed phased HPLC. But you must be optimized all of the experimental conditions.
At first, check the separation methods related to it. Then identify the desired compounds using the available standards. Also, the relevant protocols could be easily searched in online and hard copy sources.
We need to distinguish between Indigo and leuco indigo. During reaction monitoring we need to identify unreacted indigo in Leuco indigo (liquid indigo). Thats why we are working on HPLC method.