Since there is no guarantee that the original content of your manuscript might not be copied and sold to others before it is published by you, I discourage using any free-software-checkers for plagiarism; some of them are betrayers. On the other hand, I don't believe that there is a completely free one!
In any way, if you are insisting to use anti-plagiarism software, offline checker programs are better than online ones. If I were you, I prefer to use my own words instead.