I know how to dock the chemical compound with protein but i need server for metal complexes docking
If you are referring to the program that has been used in the design of complexes. I have used chemsketch . can you use GaussView program for 3D.
Thanx for replay, but i ask for molecular docking
Personally, I have used Molegro Virtual Docker software (MVD) for docking calculations of metal complexes as ligands into enzymes. I think MVD is more suitable for metal complexes than other softwares.
Hi Mostafa,
AutoDock4 can handle metal ions like Fe, Zn, and Mn:
http://autodock.scripps.edu/
http://autodock.scripps.edu/faqs-help/tutorial
http://autodock.scripps.edu/faqs-help/faq/where-do-i-set-the-autodock-4-force-field-parameters
https://www.youtube.com/playlist?list=PLlBNkYCWCYQHC6aX16z9eUonBzuxs6Wnq
http://chemistry.umeche.maine.edu/Modeling/AutoDock-tutorial.pdf
http://mgl.scripps.edu/forum/viewforum.php?f=9&sid=140cff06d86f8908dbcab53c8e4d9764
http://autodock.scripps.edu/resources/autodockzn-forcefield
Prediction of the interaction of metallic moieties with proteins: An update for protein-ligand docking techniques
October 2017Journal of Computational Chemistry
DOI: 10.1002/jcc.25080
Now i am able to do that with two program MOE and Molegro
What about lanthanides complexes?
Please go to this link :
https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.6b00407
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