Hi,
I'm trying to use the autodock vina plugin for pymol and whenever I try to set up a receptor or ligand I get this error message.
it specifically refers to line 9 of prepare_receptor4.py : from MolKit import read.
I've had a look around and I see some fixes but I can't decipher them. Could anyone give me a very simple breakdown of what is wrong and what I need to do to fix it?
Thank you for any help,
PS: running this on Ubuntu background.
1. download mgltools_i86Linux2_1.5.2.tar.gz then untar
tar -zxvf mgltools_i86Linux2_1.5.6.tar.gz
2. Run the installation script. ex) ./install.sh -c 1
> ./install.sh [options]
The installation script can be used with the following options:
[-d InstDir] specifies installation directory
(default-current directory)
[-c optimization] optimization option for compiling Python code
0 - no optimization (generates .pyc files)
1 - with optimization (generates .pyo files);
[-h] help message.
* Note: it says #!/bin/sh but has some sch shell command such as
TarDir=`pwd` ==> TarDir=$(pwd)
so change all ` ` into bash if you want to use bash shell.
3. Change ~/.profile in Ubuntu according to the end of text output from the installation process
Paul C D Hawkins
Jae-Mun Choi , I tried by your method Unable to sort itCan you help me out
Did you sort this Dr. Manoj Kumar Yadav
After you install the MGLTools, add MGLTools/MGLToolsPckgs/ into PYTHONPATH
export PYTHONPATH=$(pwd)/MGLTools/MGLToolsPckgs/:$PYTHONPATH
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