Can anyone tell me the impact of setting wrong read length value i.e., 151 instead of 301 during sample-sheet preparation as well as in sequencer (MiSeq) for 16S metagenomic run? Actually during my last run I forgot to change the cycle chemistry length from its default value to 301 for Pair-end with Nextera-XT v3-kit for 46 gut samples. Now I am having with ~5Gb data in result. But I am confused, now how to work with his data, weather it is of any use or not?? Or how can I work on it? I also want to know, how can I check the reads mapping for Phix??!!! I spiked with 25% PhiX???
Thanks in advance for any-kind of help!