Hi everyone
I am having a peptide sequence" Ac Aib Ala Aib Ala Aib Ala Gln Aib Val Aib Gly Leu Ala Pro Val Aib Aib Gln Gln Phe OH ".Aib is a synthetic amino acid i.e. Amino isobutyric Acid.Can anyone suggest any tool to model those synthetic peptides?
Check https://bioserv.rpbs.univ-paris-diderot.fr/services/PEP-FOLD/
https://biologydirect.biomedcentral.com/articles/10.1186/s13062-015-0103-4
Also check https://www.frontiersin.org/articles/10.3389/fmolb.2019.00112/full
https://www.researchgate.net/publication/353430342_Protein_Functions_and_Structure_Prediction_with_I-TASSER_a_Novel_Technology
https://www.sciencedirect.com/science/article/pii/S0167739X18314705
BAS is a package for Bayesian Variable Selection and Model Averaging in linear models and generalized linear models using stochastic or deterministic sampling without replacement from posterior distributions. Prior distributions on coefficients are from Zellner's g-prior or mixtures of g-priors corresponding to the Zellner-Siow Cauchy Priors or the mixture of g-priors for linear models or mixtures of g-priors in generalized linear models
Kindly look at this paper
https://www.cell.com/biophysj/biophysj/supplemental/S0006-3495(11)00412-7
You can use bash programming to do this. Check on the permutations function on bash
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