Jyotilipsa Mohanty

4 Questions 2 Answers 0 Followers

Questions related from Jyotilipsa Mohanty

How can we calculate RMSD in PyMOL without rejecting any atoms during alignment?

In PyMOL, the RMSD calculation using the align command iteratively rejects atoms to improve structural alignment. The output reports multiple cycles of atom rejection (e.g., 44 atoms in cycle 1,...

02 March 2025 7,367 1 View

I want to model a peptide which having Amino isobutyric Acid(Aib-U),Isovaline(Iva-J) in peptide sequence?Can anyone suggest how to model this?

Hi everyone I am having a peptide sequence" Ac Aib Ala Aib Ala Aib Ala Gln Aib Val Aib Gly Leu Ala Pro Val Aib Aib Gln Gln Phe OH ".Aib is a synthetic amino acid i.e. Amino isobutyric Acid.Can...

21 December 2021 572 5 View

To validate protein model I used RAmpage webserver and SAVES server Why I got different allowed and disallowed region for same protein model?

I predicted a protein structure using Robetta server and I got 5 models.I tried to validate these structures to know which one is good I used both Rampage web server and SAVES server.The allowed...

08 August 2019 1,068 3 View

Metal ligand docking

I have a ligand that contains Rhenium metal. Now I want to dock this ligand with a protein so while preparation of this metal-ligand shows the problem in Autodock and Schrodinger. So anyone has...

01 January 1970 9,379 4 View