Computer programs, by default, only give certain number of decimals. your '.000' may have non-zero numbers at 4th and/or 5th & so on decimal places. If allowed, I save the probability value and then print with large number of decimals places (commutations are generally done in double precision). The other practice for F-test in agricultural research area is to quote low probability as '
We determine the tabular value and compare with the calculated value. If the tabular value is greater than the calculated value, then we adopt the hypothesis
In simple terms; this means that the difference you are testing is significant; you should reject the null hypothesis H0 and accept the alternative one.