I am trying to construct ML tree through RAxML by using CIPRES portal. What is the exact process to follow? What are the parameters I have to set?

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Jose Alberto Lopez-Aleman

I believe this may help you:

https://www.researchgate.net/post/How_to_built_ML_phylogenetic_by_RaxML_on_cipres

Nilanjan Chakraborty

Thank you so much. I will try this protocol definitely.

regards

Chandan Singh Purohit

http://www.phylo.org/index.php/tools/raxmlhpc8_xsede.html

Visit these links, it may help you.