I am performing docking i.e protein and ligand but in command prompt I keep getting error that " could not open 'protein.pdbqt' for reading". Why?

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Yoshinobu Ishikawa

Hi Sania,

Make sure if your protein.pdbqt file is present in your Desktop/docking folder.

Waseem Ahmad Ansari

Assalam o Alaikum Sania Saeed

You can check you command. you are performing single ligand or multiple docking??? once you check command line.

Nusrat Alam

You can try by doing your protein pdb and pdbqt file name as same as your given receptor name in configuration.