I was curious as how to give in the amout of force in the conf file used for running NAMD simulation.
Hiqmet Kamberaj
The following script may help you, which applies a force in Z-direction. You have to select a list of atoms to which you have to apply it. This script can be copied straight to the configuration NAMD script that you call from namd.
tclForces on
tclForcesScript {
set cellLengthZ $ZLength ;# The length in the z-direction (=cellBasisVector3)
set LowerBoundary $V1
set UpperBoundary $V2
set force {0 0 $Fz}
set atmList {}
for {set i $i0} {$i$UpperBoundary || $z
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Sourav Pal
same problem i also faced. can anyone help me to pull multiple atom of a trimer protein. i need the script file
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