While I'm performing VS with autodock-PyRx I am experiencing error:
I'm sorry; I can't find or open "..\..\..\Ligands\ZINC00008739.pdbqt#"
C:\Program Files (x86)\MGLTools-1.5.6\autodock4.exe: FATAL ERROR: C:\Program Files (x86)\MGLTools-1.5.6\autodock4.exe: I'm sorry; I can't find or open "..\..\..\Ligands\ZINC00008739.pdbqt#"
The DPF file looks like this: move ..\..\..\Ligands\ZINC00008739.pdbqt# small molecule
The cause is too long ligand path. I shortend it but it did not help. It is general problem and it refers to all files that are generated during the screening
How can I solve this problem?
I would appreciate any hints
I guess the path folder is depth. Why don't you try the workspace to be something like "D:/Pyrx". Once you get your results, you can move the files to the another folder.
That was the first thing I did, but it did not help. Do you know which script generates the dpf file, I mean that what is written in it beside prepare_dpf4.py?
Perhaps a solution is as follows:
https://www.researchgate.net/post/Problems_in_using_PyRx_for_Virtual_Screening_Run_AutoGrid_Errors
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