Hello everyone,
I am trying to select certain residues in my PDB file based on a provided text file in the following format:
GLU 676 A LYS 627 B ALA 74 A ALA 714 B GLU 69 A GLN 653 B GLY 66 A TYR 619 B GLN 139 A ILE 16 B
I have made sure that all these chains (A and B) and residues with these numbers exist in my PDB file. Is there any way to do this? I don't know Python and I am not able to write or adapt scripts for this purpose. I would really appreciate any help I can get.
Thank you in advance.
Hi, Nebojša Bogdanović
With Python script, it would be more efficient, but if you can't write a script at the moment, you can try the following in Pymol command line:
select "give_a_name", resn glu and resi 676 and chain A or resn lys and resi 627 and chain B...so on
In general, on how to define selections in the PyMOL command line see:
https://pymolwiki.org/index.php/Selection_Macros
and
https://pymolwiki.org/index.php/Selection_Algebra
as well as my presentation
Presentation Intermediate PyMOL
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