I performed metagenome analysis of a cyanobacterial culture I try to purify, in order to identify the cyanobacterial species I have. It turns out that only 5% of my culture are picocyanobacteria, while the rest are Proteobacteria and Bacteroidetes. When I see my culture under the microscope I mostly see cyanobacteria, which is why I am shocked.

Can anyone suggest a way to get rid of the bacteria? The cyanobacteria I'm trying to purify are very small, belonging to Synechococcus and Cyanobium genus (I attach a reference picture).

Tank you in advance.

Edit: grammar.

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