I performed metagenome analysis of a cyanobacterial culture I try to purify, in order to identify the cyanobacterial species I have. It turns out that only 5% of my culture are picocyanobacteria, while the rest are Proteobacteria and Bacteroidetes. When I see my culture under the microscope I mostly see cyanobacteria, which is why I am shocked.
Can anyone suggest a way to get rid of the bacteria? The cyanobacteria I'm trying to purify are very small, belonging to Synechococcus and Cyanobium genus (I attach a reference picture).
Tank you in advance.
Edit: grammar.