I have been using 500 nm carboxyl modified polystyrene microparticles to couple antibodies for a bead based protein pull-down. The problem I am facing is a lot of bead aggregation after the EDC/NHS activation step. Even after sonication and vortexing the beads remain aggregated. I am activating in 25 mM MES buffer at a pH of 6.0. The beads are well dispersed before the activation process and start to aggregate sometime during the activation process. Looking for any advise on how to prevent aggregation or break up the aggregates before proceeding to the coupling step.
Thank you!