Hi all,
I am planing to perform a MD simulation of a protein with two acetylated lysines. Which workflow do you recommend me to follow? Has anyone used Vienna-PTM 2.0? any preferred force field?
Thanks in advance.
sayed mehdi Dehdashti
Hi Zabier, it seems you can perform a MD simulation of a protein with post-translational modifications through Vienna-PTM.
Plz, visit the below site.
http://vienna-ptm.univie.ac.at/
Good luck
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Xabier Arias
Hi sayed mehdi Dehdashti ! Thank you for your reply. Yes, I found that webserver and I'm currently running some simulations! Thank you
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