I want to measure the average RMSD value of my protein but only limit to the residues within 5A of targeted residue. Is that possible?
For example:
Residues within 5A of residue K66
= W64, N65, A67, S68, F181 and D182
Should I make the custom index first? But how?
Can anyone help me by giving me the command please?
I'm kinda new to gromacs. Still learning.
Thank you.