Hi Paulina,

You should check the following links:

http://people.pharmacy.purdue.edu/~mlill/software/pymol_plugins/Manual_010612.pdf

https://www.researchgate.net/post/How_do_I_dock_antifungal_drugs_to_a_HEME-containing_protein

http://autodock.1369657.n2.nabble.com/Dock-heme-to-P450-then-re-use-best-structure-to-dock-ligand-td7578518.html

http://mgldev.scripps.edu/pipermail/autodock/2014-April/009354.html

http://www.cgl.ucsf.edu/pipermail/chimera-users/2009-March/003682.html

Thank you so much, Yoshinobu.

I managed to get it sorted - I think there was something wrong with my original file!

Regards,

Paulina

Autodock requires various maps (generated by Autogrid) and .dpf file, so there may be some problem in running the input script or may be reading the file.

Hi, Could you tell me how you added the heme group to your cytochrome. I am also working cytochrome p450 but I don't know how to add heme group.