Hi, I am working with the RAD-seq data trying to speed up STACKS, specifically the ref_map.pl program, by using a computer cluster with multiple nodes and CPUs. The option -T (number of threads) in ref_map.pl specifies the number of CPUs to use but not the number of nodes, so once the maximum no. of CPUs on a single node is reached, the computational job is killed. Is there any way to make STACKS distinguish between the number of nodes and the numbers of CPUs?

More Alexey Yanchukov's questions See All
Similar questions and discussions