How to create different topology files for H-REMD in Amber?

26 July 2023 0 5K Report

Hi,

I am learning about the H-REMD (Hamiltonian Replica Exchange Molecular Dynamics) method. I am concerning about how to prepare different topology files for creating different replicas. Is there is any tutorial is available for H-REMD in Amber? How can we add potentials in the force fields?

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