Hello,
I'm new to bioinformatics, my NGS dataset consists of 50 FASTQ files and each file is of size 10-15 GB.. I need to convert these FASTQ files to FASTA files.
P.S. I am using google colab
I have tried
!seqtk seq -a input.fastq > output.fasta
and I've tried cut paste command too but they are not working ,, I believe it is because the input file is too big..
can anybody plz help ??
Thanks in advance,
May you share somewhat of your objective? Maybe you don't need to convert the full set, or maybe you need to apply and specific workflow in order to accomplish something additional (what answer are you trying to answer with those data?). Thanks!
You can do it with AWK command in the command line
https://bioinformaticsworkbook.org/dataWrangling/fastaq-manipulations/converting-fastq-format-to-fasta.html#gsc.tab=0
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