I want to perform docking using Swissdock. Swissdock uses CHARMM crd and psf files. I tried to build psf files using VMD autopsfgen. How can I convert pdb file from to crd format?
Use awk command in Amber and CHARMM for the conversion of pdb to crd. SwissParam - online tool also can be used for conversion of various topologies and parameters.