Hello,
I want to run protein ligand MD simulation using Amber99sb force field. i generated protein topology files using gromacs easily but when i generated ligand topology using AmberTools15 and then start following Protein-Ligand Complex - Bevan Lab tutorial it give following error.
Fatal error:
Something is wrong in the coordinate formatting of file 1T2P-native.gro. Note that gro is fixed format (see the manual)
kindly tell the way of converting amber topology and coordinates files into gromacs format.