Is there a way to modify an ".sh" file to automatically call another .sh in another directory after it completes; as sometimes number of job in a queue is limited.
Also i believe cant use
qsub -W depend=afterok:job_id
as they are independent jobs.
Two simplest things that come to my mind are:
1. You can add something like /another_folder/./second_script.sh at the end of the first script.
2. You can start your script as /folder/./first_script.sh && /another_folder/./second_script.sh
I am not quite sure what use you have but from what I understand you want to Start Job 1 and once that is finished run Job 2 ?
Or are you looking to run them both concurrently i.e. Submit script and start Job1 and Job2.
For the first one people have already highlighted the use of a loop and then just pointing to the second job.
If you want to run concurrently then you can use the & to initiate the runs at the same time. Just make sure you add a wait command at the end otherwise your submission will terminate once one job is done.
./somepath1/file1.sh & ./somepath2/file2.sh
wait
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